GPUs for Bioinformatics
Example Affymetrix Laser scan
Feature size Affymetrix Gene Chips
Other examples of Affymetrix Gene Chip laser output 2nd
Example Latex Biology

RNAnet

NCBI GEO Affymetrix GeneChip Exon Correlation Coefficients

Heatmaps displaying the correlation between Affymetrix probes for the same Ensembl exon.

HG-U133A Correlation Coefficients

Heatmaps displaying the correlation between probes in each of the 22299 probesets on Affymetrix' HG-U133A genechip.

HG_U95E Correlation Coefficients

heatmap created by correlation_67520_at.for 67520_at
Probeset 67520_at contains 16 PM probes (left) and 16 mismatch probes (right). Correlation coefficients calculated from 56-84 GEO GeneChips.

Code to colour heatmaps.

PHP/JavaScript demo if picture not loaded see field_guide/help.html (best with firefox)

W.Langdon 27 April 2007 (Last revised 30 2009)